
PUBLICATIONS 

1. 
A.
Chaudhri, I. E. Zarraga, S. Yadav, T. W. Patapoff, S. J.
Shire, G. A. Voth, 2012, The Role of Amino Acid Sequence
in the Self 

Association
of Therapeutic Monoclonal Antibodies: Insights from
CoarseGrained Modeling, to appear in J. Phys. Chem.
B. 
2. 
A.
Chaudhri, I. E. Zarraga, T. J. Kamerzell, J. P. Brandt,
T. W. Patapoff, S. J. Shire, G. A. Voth, 2012, Coarse
Grained Modeling of 

SelfAssociation
of Therapeutic Monoclonal Antibodies, J. Phys. Chem. B,
116:80458057. 
3. 
A.
Chaudhri, J. R. Lukes, 2010, Velocity and Stress Autocorrelation Decay in
Isothermal Dissipative Particle Dynamics, 

Phys. Rev. E, 81:026707 (111). 
4. 
A.
Chaudhri, J. R. Lukes, 2009, Multicomponent Energy
Conserving Dissipative Particle Dynamics: A General
Framework for 

Mesoscopic
Heat Transfer
Applications, J. Heat Transfer, 131:033108 (19). 
5. 
A.
Chaudhri, J. R. Lukes, 2009, Multicomponent Dissipative
Particle Dynamics: Formulation of a General Framework
for Simulations of 

Complex
Fluids, Int. J. Num. Methods Fluids, 60:867891. 
6. 
A. Chaudhri,
M. Parang, B. E. Nelson, 2007, Computer Simulation and
Experimental Verification of Welding in a Thin Steel
Sheet, 

Containment,
Int. J. Heat Mass Transfer,
50:44394445. 
7. 
A. Chaudhri,
M. Parang, B. E. Nelson, 2006, Thermal Modeling and Analysis
of a QuasiPoloidal Stellerator Modular Coil, Appd. 

Thermal
Engg., 26:974982. 

TALKS, CONFERENCES,
& POSTERS 

1. 
A.
Chaudhri, SelfAssociation of Therapeutic Monoclonal
Antibodies: A CoarseGrained Perspective on the Role of
Electrostatics and 

More,
Invited Talk for the Symposium on 'Antibodies in
Solution', Biomolecular Interaction Technologies Center,
University of New 

Hampshire,
Durhamn, NH, July 2012. 
2. 
J. R. Lukes,
A. Chaudhri, Dissipative Particle Dynamics for Fluid
Flow and Heat Transfer, Proceedings of the 10th
International 

Conference
on Nanochannels, Microchannels, and Minichannels, Puerto
Rico, July 2012. 
3. 
A.
Chaudhri, SelfAssociation of Therapeutic Monoclonal
Antibodies: A CoarseGrained Perspective on the Role of
Electrostatics and 

More, Lawrence Berkeley National Lab,
Berkeley, CA April 2012. 
4. 
A.
Chaudhri, SelfAssociation of Therapeutic Monoclonal
Antibodies: A CoarseGrained Perspective on the Role of
Electrostatics and 

More,
Invited Talk at NASA Ames Research Center, Moffett
Field, CA April 2012. 
5. 
A.
Chaudhri, I. E. Zarraga, J. P. Brandt, S. J. Shire, G.
A. Voth, Role of Electrostatics in Antibody
SelfAssociation: A Coarse 

Grained
Perspective, The Essential Protein Engineering Summit
Conference (PEGS), Boston, MA 2011 
6. 
I. Zarraga, A. Chaudhri, S. J. Shire, G. A.
Voth, CoarseGrained Modeling of Antibody
Networking at High Concentrations, 

Symposium on High Concentration Antibody Formulations,
HoffmanLa Roche, Basel, Switzerland
2010 
7. 
A.
Chaudhri, I. Zarraga, T. Kamerzell, S. Alavattam, S. J. Shire, G. A.
Voth, CoarseGrained Modeling of Antibody
SelfAssociation, 

Americal Chemical Society Meeting, Boston, MA
2010 
8. 
A. Chaudhri
and G. A. Voth, CoarseGrained Modeling of Antibody
SelfAssociation, NSFCRC Meeting, University of
Chicago, IL 

July 2010 
9. 
A. Chaudhri
and G. A. Voth, CoarseGrained Modeling of Antibody
SelfAssociation, Review Meeting, Genentech Inc. , South
San 

Francisco,
CA June 2010 
10. 
A.
Chaudhri, Multiscale ParticleBased Methods with
Applications in ThermalFluids Engineering, Invited
Talk at National Chemical 

Laboratory, Pune, India
Dec 2008. 
11. 
A.
Chaudhri, J. R. Lukes, Dissipative Particle Dynamics:
Velocity and Stress Autocorrelation Decay Times for
Different Integration 

Algorithms, International Conference on Mesoscopic Methods
in Engineering & Science, Amsterdam, Netherlands June 2008 
12. 
A.
Chaudhri, J. R. Lukes, Multicomponent Energy
Conserving Dissipative Particle Dynamics: A General
Framework for Mesoscopic 

Heat Transfer
Applications, Proceedings of the 1st International
Conference on Micro/Nanoscale Heat Transfer,
MNHT200852218, 

Tainan,
Taiwan Jan 2008. 
13. 
J. R. Lukes,
A. Chaudhri, Dissipative Particle Dynamics for
ThermalFluid Engineering, Dissipative Particle
Dynamics: Addressing 

deficiencies and establishing new frontiers, CECAM
Workshop 2008. 
14. 
A.
Chaudhri, J. R. Lukes, Stochastic, Mesoscopic,
ParticleBased Methods in Fluid Mechanics and Heat
Transfer, Frontiers in 

Mechanical Engineering 2008: NanoMechanical Engineering,
University of Pennsylvania, Philadelphia PA 2008 
15. 
A.
Chaudhri, J. R. Lukes, Multiscale Modeling of Complex
Fluids, 1st PAOHWV Simulators Meeting, Carnegie Mellon
University, 

Pittsburgh PA June 2007 
16. 
A.
Chaudhri, J. R. Lukes, Rheology of Deformable Particle
Suspensions by Dissipative Particle Dynamics, American
Physical Society 

March Meeting, Denver, CO
USA March 2007 
17. 
A.
Chaudhri, J. R. Lukes, Molecular Dynamics Study of Fluid
Flow in Carbon Nanotubes, Nanoday, University of
Pennsylvania, 

Philadelphia PA 2005 
18. 
A.
Chaudhri, J. R. Lukes, Molecular Dynamics Study of Fluid
Flow in Carbon Nanotubes, NanoBio Interface Center
Meeting, 

University
of Pennsylvania, PA Dec 2005 
19. 
A. Lumsdaine, A. Chaudhri, M. Parang, B. Nelson, S.
Sridharan and S. Tang, Structural Integrity of QuasiPoloidal
Stellerator (QPS) 

Magnetic Coils, Twentyfirst IEEE/NPSS Symposium on
Fusion Engineering, Oak Ridge National Lab, Knoxville,
TN 2005. 



OTHER PUBLICATIONS 

1. 
A. Chaudhri, J. R. Lukes, Homogeneous Vapor Nucleation
using Isothermal Multibody Dissipative
Particle Dynamics 

arXiv:1203.0069v1 [condmat.statmech] 
2. 
A. Chaudhri, J. R. Lukes, A Rayleigh Benard Convective
Instability Study Using Energy Conserving Dissipative
Particle Dynamics 

arXiv:1201.3641v1 [condmat.statmech] 
3. 
A. Chaudhri, Molecular Dynamics Study of Argon Flow in a
Carbon Nanotube, 2005. 
4. 
A.
Chaudhri, Dissipative Particle Dynamics for Mesoscopic
ParticleBased ThermalFluid Simulations, Ph.D.
Dissertation, University of 

Pennsylvania, 2009 
5. 
A.
Chaudhri, Thermal Modeling and Verification of a QuasiPoloidal
Stellerator Modular Coil, M.S. Thesis, University of
Tennessee, 

Knoxville, 2004 
6. 
A.
Chaudhri, Selection, Design and Analysis of a Micro
Hydro Turbine of CrossFlow Type, B.E. Project, Fluid
Mechanics & Hydraulics 

Division, Bharat Heavy Electricals Ltd. R&D
Headquarters, Hyderabad, India 2002 



WORKSHOPS AND PROFESSIONAL MEETINGS 

1. 
Computational Biophysics Workshop, Pittsburgh
Supercomputing Center, Pittsburgh, PA Nov 2005 
2. 
Frontiers in Tribology at the Atomic Scale, Oak Ridge
National Lab, Oak Ridge, TN March 2004 




